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Youzhong Li, Xinyu Zhang, Zhongxu Lin, Qian-Hao Zhu, Yanjun Li, Fei Xue, Shuaishuai Cheng, Hongjie Feng, Jie Sun*, Feng Liu*. Comparative transcriptome analysis of interspecific CSSLs reveals candidate genes and pathways involved in verticillium wilt resistance in cotton (Gossypium hirsutum L.). Industrial Crops & Products, 2023, 197, 116560. 5. Nian Wang, Yuanxue Li, Chao Shen, Yang Yang, Hongya Wang, Tian Yao, Xianlong Zhang, Keith Lindsey, Zhongxu Lin*. High-resolution sequencing of nine elite upland cotton cultivars uncovers genic variations and breeding improvement targets. The Plant Journal, 2023, 113 (1): 145-159. 6. Ruiting Zhang, Chao Shen, De Zhu, Yu Le, Nian Wang, Yuanxue Li, Xianlong Zhang & Zhongxu Lin*. Fine-mapping and candidate gene analysis of qFL-c10-1 controlling fiber length in upland cotton (Gossypium hirsutum L.). Theoretical and Applied Genetics, 2022, 135 (12), 4483–4494. 7. Nian Wang, Beibei Zhang, Tian Yao, Chao Shen, Tianwang Wen, Ruiting Zhang, Yuanxue Li, Yu Le, Zhonghua Li, Xianlong Zhang and Zhongxu Lin*. Re enhances anthocyanin and proanthocyanidin accumulation to produce red foliated cotton and brown fiber. Plant Physiology, 2022: 189: 1466–1481. 8. Bin Gao, Gaofeng Ren, Tianwang Wen, Haiping Li, Xianlong Zhang, Zhongxu Lin*. A super PPR cluster for restoring fertility revealed by genetic mapping, homocap-seq and de novo assembly in cotton. Theoretical and Applied Genetics, 2022, 135: 637-652. 9. Feng J, Li Y, Zhang J, Zhang M, Zhang X, Shahzad K, Guo L, Qi T, Tang H, Wang H, Qiao X, Lin Z*, Xing C* and Wu J*. Transcript complexity and new insights of restorer line in CMS-D8 cotton through full-length transcriptomic analysis. Front Plant Sci, 2022, 13: 930131. 10. Yongqi Li, Taili Nie, Meng Zhang, Xuexian Zhang, Kashif Shahzad, Liping Guo, Tingxiang Qi, Huini Tang, Hailin Wang, Xiuqin Qiao, Juanjuan Feng, Zhongxu Lin*, Jianyong Wu*, Chaozhu Xing*. Integrated analysis of small RNA, transcriptome and degradome sequencing reveals that micro-RNAs regulate anther development in CMS cotton. Industrial Crops & Products, 2022, 176, 114422. 11. Bei Han#, Fengjiao Wang#, Zhilin Liu, Lin Chen, Dandan Yue, Weinan Sun, Zhongxu Lin, Xianlong Zhang, Xiaofeng Zhou*, Xiyan Yang*. 2022. Transcriptome and metabolome profiling of interspecific CSSLs reveal general and specific mechanisms of drought resistance in cotton. Theoretical and Applied Genetics, 2022, 135:3375–3391. 12. Cong Huang, Chao Shen, Tianwang Wen, Bin Gao, De Zhu, Dingguo Li*, Zhongxu Lin*. Genome‑wide association mapping for agronomic traits in an 8‑way Upland cotton MAGIC population by SLAF‑seq. Theoretical and Applied Genetics, 2021, 134: 2459-2468. 13. Chunping Guo, Zhenyuan Pan, Chunyuan You, Xiaofeng Zhou, Cong Huang, Chao Shen, Ruihai Zhao, Qingyong Yang, Longfu Zhu, Raheel Shahzad, Fande Meng, Zhongxu Lin* and Xinhui Nie*. Association mapping and domestication analysis to dissect genetic improvement process of upland cotton yield-related traits in China. Journal of Cotton Research, 2021, 4:10. 14. De Zhu, Yu Le, Ruiting Zhang, Xiaojing Li and Zhongxu Lin*. A global survey of the gene network and key genes for oil accumulation in cultivated tetraploid cottons. Plant Biotechnology Journal, 2021, 19 (6): 1170-1182. 15. Chao Shen, Nian Wang, De Zhu, Pengcheng Wang, Maojun Wang, Tianwang Wen, Yu Le, Mi Wu, Tian Yao, Xianlong Zhang, Zhongxu Lin*. Gossypium tomentosum genome and interspecific ultra-dense genetic maps reveal genomic structures, recombination landscape and flowering depression in cotton. Genomics, 2021, 113, 1999-2009. 16. Hantao Wang, Ruiting Zhang, Chao Shen, Ximei Li, De Zhu, Zhongxu Lin*. Transcriptome and QTL analyses reveal candidate genes for fiber quality in Upland cotton. The Crop Journal, 2020, 8 (1): 98-106. 17. Muhammad Mahmood Ahmed, Cong Huang, Chao Shen, Anam Qadir Khan, Zhongxu Lin*. Map-based cloning of qBWT-c12 discovered brassinosteroid-mediated control of organ size in cotton. Plant science, 2020, 291: 110315. 18. De Zhu, Ximei Li, Zhiwei Wang, Chunyuan You, Xinhui Nie, Jie Sun, Xianlong Zhang, Dawei Zhang* and Zhongxu Lin*. Genetic dissection of an allotetraploid interspecific CSSLs guides interspecific genetics and breeding in cotton. BMC Genomics, 2020, 21: 431. 19. Xinhui Nie#, Tianwang Wen#, Panxia Shao, Binghui Tang, Aini Nuriman-guli, Yu Yu, Xiongming Du*, Chunyuan You*, Zhongxu Lin*. High-density genetic variation maps reveal the correlation between asymmetric interspecific introgressions and improvement of agronomic traits in Upland and Pima cotton varieties developed in Xinjiang, China. The Plant Journal, 2020, 103: 677-689. 20. Tianwang Wen, Tian Yao, Chunyuan You, Zhongxu Lin*. A case study of a micro-inversion event in dark brown fiber cotton (Gossypium hirsutum). The Crop Journal, 2020, 8: 577-585. 21. 吴迷, 汪念, 沈超, 黄聪, 温天旺, 林忠旭*. 基于重测序的陆地棉InDel标记开发与评价. 作物学报, 2019, 45 (2): 196-203. 22. Maojun Wang#, Lili Tu#, Daojun Yuan#, De Zhu, Chao Shen, Jianying Li, Fuyan Liu, Liuling Pei, Pengcheng Wang, Guannan Zhao, Zhengxiu Ye, Hui Huang, Feilin Yan, Yizan Ma, Lin Zhang, Min Liu, Jiaqi You, Yicheng Yang, Zhenping Liu, Fan Huang, Baoqi Li, Ping Qiu, Qinghua Zhang, Longfu Zhu, Shuangxia Jin, Xiyan Yang, Ling Min, Guoliang Li, Ling-Ling Chen, Hongkun Zheng, Keith Lindsey*, Zhongxu Lin*, Joshua A. Udall* & Xianlong Zhang*. Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense. Nature Genetics, 2019, 51: 224-29. 23. Tianwang Wen, Baosheng Dai, Tao Wang, Xinxin Liu, Chunyuan You*, Zhongxu Lin*. Genetic variations in plant architecture traits in cotton (Gossypium hirsutum) revealed by a genome wide association study. The Crop Journal, 2019, 7 (2): 209-216. 24. Shen C, Wang N, Huang C, Wang M, Zhang X, Lin Z*. Population genomics reveals a fine-scale recombination landscape for genetic improvement of cotton. The Plant Journal, 2019, 99: 494-505. 25. Wenxia Zhao#, Xianhui Kong#, Yang Yang#, Xinhui Nie, Zhongxu Lin*. Association mapping seed kernel oil content in upland cotton using genome-wide SSRs and SNPs. Molecular Breeding, 2019, 39: 105. 26. Ayaz Ali Keerio, Chao Shen, Yichun Nie, Muhammad Mahmood Ahmed, Xianlong Zhang and Zhongxu Lin*. QTL mapping for fiber quality and yield traits based on introgression lines derived from Gossypium hirsutum × G. tomentosum. International Journal of Molecular Science, 2018, 19: 243. 27. Cong Huang, Chao Shen, Tianwang Wen, Bin Gao, De Zhu, Xiaofang Li, Muhammad Mahmood Ahmed, Dingguo Li*, Zhongxu Lin*. SSR-based association mapping of fiber quality in upland cotton using 8-way MAGIC population. Molecular Genetics and Genomics, 2018, 293: 793-805. 28. Tianwang Wen, Mi Wu, Chao Shen, Bin Gao, De Zhu, Xianlong Zhang, Chunyuan You,* and Zhongxu Lin*. Linkage and association mapping reveals the genetic basis of brown fibre (Gossypium hirsutum). Plant Biotechnology Journal, 2018, 16: 1654-1666. 29. 黄聪, 李晓方, 李定国*, 林忠旭*. 利用陆地棉MAGIC群体定位产量、生育期和株高性状的QTL. 作物学报, 2018, 44 (9): 1320-1333. 30. 戴宝生, 郭欢乐, 尤春源, 张献龙, 林忠旭*. 棉花陆海杂种标记偏分离染色体上重要农艺性状的QTL定位. 棉花学报, 2018, 30 (6): 435-447. 31. Dai B, Guo H, Huang C, Ahmed MM and Lin Z*. Identification and characterization of segregation distortion loci on cotton chromosome 18. Frontiers in Plant Science, 2017, 7: 2037. 32. Huang C, Nie X, Shen C, You C, Li W, Zhao W, Zhang X* and Lin Z*. Population structure and genetic basis of the agronomic traits of Upland cotton in China revealed by a genome-wide association study using high-density SNPs. 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教材与著作 1. 《植物生物技术》(第二版),参编,2012,科学出版社 |